JsDoc, this is a very nice and well documented Open Source Toolkit for Javascript documentation. This supports all javascript frame work(including YUI).
So this will be a good solution to avoid and make our code very clear and structured way.
Have a look at it:
http://jsdoctoolkit.org/project.html
http://code.google.com/p/jsdoc-toolkit/wiki/InlineDocs
JsDoc Toolkit is an application, written in JavaScript, for automatically generating template-formatted, multi-page HTML (or XML, JSON, or any other text-based) documentation from commented JavaScript source code.
Based on the JSDoc.pm project, this was renamed "Jsdoc Toolkit" during development as it grew into more than a simple version upgrade.
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